V-Phaser 2 is a tool to call variants in genetically heterogeneous populations from ultra-deep sequence data. Compiling the " variant_caller " binary will result in the following.
bam_manip.cpp: In function ‘void sampling(int&, int&, int&, int&, int&, const strvec_t&, int)’:
bam_manip.cpp:184:9: error: ‘INT_MAX’ was not declared in this scope
bam_manip.cpp:185:9: error: ‘INT_MIN’ was not declared in this scope
make: *** [all] Error 1
Add the "#include <climits>" to the "bam_manip.h" file. Rerun the compile with " make -lz ". Once this is complete, change directory from src into ../bin. The " variant_caller " should be available and ready to use.