{"id":1120,"date":"2011-05-03T13:35:16","date_gmt":"2011-05-03T11:35:16","guid":{"rendered":"http:\/\/oldblogs.uct.ac.za\/blog\/big-bytes\/2011\/05\/03\/introducing-mr-bayes"},"modified":"2015-08-14T14:03:43","modified_gmt":"2015-08-14T12:03:43","slug":"introducing-mr-bayes","status":"publish","type":"post","link":"https:\/\/ucthpc.uct.ac.za\/index.php\/2011\/05\/03\/introducing-mr-bayes\/","title":{"rendered":"Introducing Mr Bayes"},"content":{"rendered":"One of our students requested that we install <a href=\"http:\/\/mrbayes.csit.fsu.edu\/\">MrBayes<\/a>, software for the estimation of phylogeny on a genetic level.\u00a0 This is a fairly popular package which has been ported to numerous platforms so we thought we'd have a crack at installing it.\u00a0 Building the package on Scientific Linux was fairly easy with a few caveats.\u00a0 The base install is insufficient and requires readline-devel and ncurses-devel.\u00a0 Once these were installed the package compiled fine.\u00a0 Copying the package to a shared NFS software area is sufficient for all worker nodes to be able to run it.\u00a0 We compiled it with MPI options and it seems to respond happily to mpirun instantiations.\r\n\r\n<a href=\"http:\/\/mrbayes.csit.fsu.edu\/\"><img src=\"https:\/\/ucthpc.uct.ac.za\/wp-content\/uploads\/2015\/07\/bayes.jpg\" alt=\"\" border=\"0\" \/><\/a>","protected":false},"excerpt":{"rendered":"<p>One of our students requested that we install <a href=\"http:\/\/mrbayes.csit.fsu.edu\/\">MrBayes<\/a>, software for the estimation of phylogeny on a genetic level.&nbsp; This is a fairly popular package which has been ported to numerous platforms so we thought we&#8217;d have a crack at installing it.&nbsp; Building the package on Scientific Linux was fairly easy with a few caveats.&nbsp; The base install is insufficient and requires readline-devel and ncurses-devel.&nbsp; Once these were installed the package compiled fine.&nbsp; Copying the package to a shared NFS software area is sufficient for all worker nodes to be able to run it.&nbsp; We compiled it with MPI options and it seems to respond happily to mpirun instantiations.<\/p>\n<p><a href=\"http:\/\/mrbayes.csit.fsu.edu\/\"><img decoding=\"async\" src=\"http:\/\/blogs.uct.ac.za\/gallery\/1253\/bayes.jpg\" border=\"0\"><\/a> <\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":[],"categories":[9,10],"tags":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.4 - 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